2024
Hodoameda, P. Ebel, G. D., Mukhopadhyay, S., Clem, R. J. (2024) Extreme infectious titer variability in individual Aedes aegypti mosquitoes infected with Sindbis virus is associated with both differences in virus population structure and dramatic disparities in specific infectivity. PLoS Path. 20(2):e1012047.
2022
Wescott, C.E., Qazi, S. A., Maiocco, A. M., Mukhopadhyay, S., and Sokoloski, K. J. (2022) Binding of hnRNP I–vRNA Regulates Sindbis Virus Structural Protein Expression to Promote Particle Infectivity. Viruses. 14: 1423.
Penn, W. D. and Mukhopadhyay, S. (2022) Abracadabra, one becomes two: The importance of context in viral -1 programmed ribosomal frameshifting. mBio. 23:e0246821.
Ren, S. C., Qazi, S. A., Towell, B., Wang, C-Y, and Mukhopadhyay, S. (2022) Mutations at the Alphavirus E2/E1 inter-dimer interface have host-specific phenotypes. J. Virol. 96:e02149-21.
2021
Carmody, P. J.†, Zimmer, M. H. †, Kuntz, C. P., Harrington, H. R., Duckworth, K. E., Penn, W. D., Mukhopadhyay, S., Miller III, T. F., and Schlebach, J. P. (2021) Coordination of -1 Programmed Ribosomal Frameshifting by Transcript and Nascent Chain Features Revealed by Deep Mutational Scanning. NAR. 49:12943-54.
Chen, R., Plante, J. A., Plante, K. S., Yun, R., Mirchandani, D., Liu, J, Haller, S., Mukhopadhyay, S., and Weaver, S. W. (2021) Lineage Divergence and Vector-Specific Adaptation Have Driven Chikungunya Virus onto Multiple Adaptive Landscapes. mBio. Nov 9:e02738-21.
Button, J. M. and Mukhopadhyay, S. (2021) Capsid-E2 interactions rescue core assembly in viruses that cannot form cytoplasmic nucleocapsid cores. J. Virol. 95:e01062-21. *Selected as “Significant Interest in This Issue”
2020
Roger, K.J., Jones-Burrage, S. E., Maury, W., and Mukhopadhyay, S. (2020) TF protein of Sindbis virus antagonizes host type I interferon responses in a palmitoylation-dependent manner. Virology 542:63-70.
Harrington, H. R., Zimmer, M. H., Chamness, L. M., Nash, V., Penn, W. D., Miller III, T. F. Mukhopadhyay, S., and Schlebach, J. S. (2020) Cotranslational Folding Stimulates Programmed Ribosomal Frameshiting in the Alphavirus Structural Prolyprotein. J. Biol. Chem. 295(20):6798-6808. **Selected for Editor’s choice
Mastrodomenico, V., Esin, J. J., Qazi, S. A., Khomutov, M. A., Ivanov, A. V., Mukhopadhyay, S., and Mounce, B.C. (2020) Virion-associated spermidine transmits with Rift Valley fever virus to maintain infectivity and promote entry. ACS Infect. Dis. 6:2490-2501. **Selected for Editor’s choice
Penn, W. D., Harrington, H. R., Schelbach, J. P. and Mukhopadhyay, S. (2020) Regulators of viral frameshifting: More than RNA influences translation events. Ann. Rev. Virol. 7:219-238.
Button, J. M., Qazi, S. A., Wang, J. C., and Mukhopadhyay, S. (2020) Revisiting an old friend: new findings in Alphavirus structure and assembly. Curr. Opin. Virol. 45:25-33.
Button, J.M. and Mukhopadhyay, S. (2020) Removing the Polyanionic Cargo Requirement for Assembly of Alphavirus Core-Like Particles to Make an Empty Alphavirus Core. Viruses. 12, 846.
2019
Dunbar C.A., Rayaprolu V., Wang J.C., Brown C.J., Leishman E., Jones-Burrage S., Trinidad J.C., Bradshaw H.B., Clemmer D.E., Mukhopadhyay S., Jarrold M.F. (2019) Dissecting the Components of Sindbis Virus from Arthropod and Vertebrate Hosts: Implications for Infectivity Differences. ACS Infect Dis. 2019 Apr 15.
Ramsey, J., Chavez, M., and Mukhopadhyay, S. (2019) Domains of the TF protein important in regulating its own palmitoylation. Virology. 531:31-39.
2018
Rayaprolu, V., Ramsey, J., Wang, C-Y., and Mukhopadhyay, S. (2018) Alphavirus Purification Using Low-speed Spin Centrifugation. Bio-protocol. 8(6): e2772.
Lazaro G.R., Mukhopadhyay S, and Hagan M.F. (2018). Why enveloped viruses need cores-the contribution of a nucleocapsid core to viral budding. Biophys J. 114(3):619-630.
Wang, J. C., Mukhopadhyay, S., and Zlotnick, A. (2018) Geometric Defects and Icosahedral Viruses. Viruses. 10(1). pii: E25.
Chen, R., Mukhopadhyay, S., Merits, A., Bolling, B., Nasar, F., Coffey, L. K., Powers, A., Weaver, S. C., and ICTV Report Consoritum (2018) ICTV virus taxonomy profile: Togaviridae. J. Gen. Virol. 99(6):761-2.
2017
Rayaprolu, V., Moore, A., Wang, C-Y, Goh, B. C., Perilla, J. R., Zlotnick, A., and Mukhopadhyay, S. (2017) Length of encapsidated cargo impacts stability and structure of in vitro assembled Alphavirus core-like particles. J. Phys.: Condens. Matter. 29(48):484003.
Ramsey, J. and Mukhopadhyay, S. (2017) “Disentangling the frames, the State of Research on the Alphavirus 6K and TF Proteins.” Viruses 9(8). pii: E228.
Ramsey, J., Renzi, E. C., Arnold, R. A., Trinidad, J. C., and Mukhopadhyay, S. (2017) Palmitoylation of Sindbis virus TF protein regulates its plasma membrane localization and subsequence incorporation into virions. J. Virol. 91(3): e02000-16.
2016
Myagmarjav, B., Konkol, M. A., Ramsey, J., Mukhopadhyay, S., and Kearns, D. B. (2016) ZpdN, a plasmid-encoded sigma factor homolog, induces pBS32-dependent cell death in Bacillus subtilis. J Bacteriol. 198(21):2975-2984.
2015
Khanal, N., Pejaver, V., Li, A., Radivojac, P., Clemmer, D. E., and Mukhopadhyay, S. (2015) The position of proline mediates the reactivity of S-palmitoylation. ACS Chem. Biol. 10(11):2529-2536
Mohari, B., Licata, N. A., Kysela, D. T., Merritt, P. M., Mukhopadhyay, S., Brun, Y. V., Setayeshgar, S., and Fuqua, C. (2015) Novel Pseudotaxis Mechanisms Improve Migration of Straight Swimming Bacterial Mutants through a Porous Environment. mBio. 6(2) e00005-15.
Zeng, X., Mukhopadhyay, S., Brooks III, C. L. (2015) Residue level resolution of alphavirus envelope protein interactions in pH dependent fusion. PNAS. 112(7):2034-9.
Sokoloski, K.J., Haist, K.C., Morrison, T.E., Mukhopadhyay, S. and Hardy, R.W. (2015) NonCapped Sindbis virus genomic RNAs and their role during Alphaviral infection. J. Virol. 89(11):6080-92
Chao, C., Wang, C-Y, Rayaprolu, V., Mukhopadhyay, S., and Zlotnick, A. (2015) Self-assembly of an Alphavirus core-like particle is distinguished by strong intersubunit association energy and structural defects. ACS Nano. 9(9):8898-8906.
2014
Li, Z., Dilger, J. M., Pejaver, V., Smiley, D., Arnold, R., Mooney, S., Mukhopadhyay, S., Radivojac, P., and Clemmer, D. (2014) Intrinsic Size Parameters for Palmitoylated and Carboxyamidomethylated Peptides. Inter. J. Mass Spec. 368:6-14.
Tsetsarkin, K.A., Chen, R., Yun, R., Rossi, S.L., Plante, K.S., Guerbois, M., Forrester, N., Perng, G.C., Sreekumar, E., Leal, G., Huang, J., Mukhopadhyay, S., and Weaver, S.C. (2014) Multi-peaked Aedes albopictus-adaptive landscape for chikungunya virus evolution predicts continued increases in transmissibility. Nat Commun. 16(5):4084-4097.
Snyder, A.J., Mukherjee, S., Glass, J. K., Kearns, D. B., and Mukhopadhyay, S. (2014). The canonical twin-arginine translocase components are not required for secretion of folded GFP from B. subtilis. J. Applied and Environmental Microbiology. Appl. Environ. Microbiol., 80(10):3219-3232.
2013
Sokoloski, K.J., Snyder, A.J., Liu, N.H., Hayes, C.A., Mukhopadhyay, S., and Hardy, R.W. (2013) Encapsidation of host-derived factors correlates with enhanced infectivity of Sindbis virus. J. Virol. 87(22):12216-12226.
Tsvetkova, I. B., Cheng, F., Ma, X., Moore, A. W., Howard, B., Mukhopadhyay, S., and Dragnea, B. (2013) Fusion of mApple and Venus fluorescent proteins to the Sindbis virus E2 protein leads to different cell-binding properties. Virus Res. 177(2):138-146.
Cheng, F., Tsvetkova, I. B., Khuong, Y., Moore, A., Arnold, R. J., Goicochea, N. L., Dragnea, B., and Mukhopadhyay, S. (2013) The packaging of different cargo into enveloped viral nanoparticles. Molecular Pharmaceutics. 10(1):51-8.
2012
Snyder, A. J. and Mukhopadhyay, S. (2012) The Alphavirus E3 protein functions in a clade-specific manner. J Virol. 86(24):13609-20.
Sokoloski, K. J., Hayes, C. A., Dunn, M. P., Balke, J. L., Hardy, R. W., and Mukhopadhyay, S. (2012) Sindbis Virus Infectivity Improves During the Course of Infection in Both Mammalian and Mosquito Cells. Virus Res. 167(1):26-33.
Snyder, A. J., Sokoloski, K. J., and Mukhopadhyay, S. (2012) Mutating conserved cysteines in the alphavirus E2 glycoprotein causes virus-specific assembly defects. J. Virol. 86(6):3100-11.
2011
Zlotnick, A. and Mukhopadhyay, S. (2011) Virus assembly, allostery, and antivirals. Trends in Microbiology. 19(1):14-23.
Lai, Y., Yi, G., Chen, A., Bhardwaj, K., Valverde, R. A., Zlotnick, A., Mukhopadhyay, S., Ranjith-Kumar, C. T., and Kao, C. C. (2011) Viral Double-strand RNA-binding Proteins Can Enhance Innate Immune Signaling By Toll-Like Receptor 3. PlosOne. 6(10):e25837.
Cheng, F. and Mukhopadhyay, S. (2011) Generating enveloped virus-like particle with in vitro assembled cores. Virology. 413(2):153-60.
2009
Parrott, M. M., Sitarski, S. A., Arnold, R. J., Picton, L.. K., Hill, R. B., and Mukhopadhyay, S. (2009) Role of Conserved Cysteines in the Alphavirus E3 Protein. J. Virol. 83(6): 2480-2490.
2007
Goicochea, N. L, De, M., Rotello, V. M., Mukhopadhyay, S., and Dragnea, B. (2007) Core-like Particles of an Enveloped Animal Virus can Self-Assemble Efficiently on Artificial Templates. NanoLetters. 7(8):2281-90.